T1G3I8_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1G3I8_HELRO

Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (301 aa)

Predicted Functional Partners:

T1G9M0_HELRO

0.945

T1FY80_HELRO

0.924

T1F6E5_HELRO

0.918

T1EFW4_HELRO

0.876

T1EGR1_HELRO

0.876

T1G984_HELRO

0.873

T1FXD5_HELRO

0.867

T1FSL1_HELRO

0.865

T1G749_HELRO

0.831

T1F3D0_HELRO

0.741

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EFW4_HELRO	T1EGR1_HELRO	T1EFW4	T1EGR1	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.907
T1EFW4_HELRO	T1F3D0_HELRO	T1EFW4	T1F3D0	Uncharacterized protein.	Uncharacterized protein.	0.436
T1EFW4_HELRO	T1FSL1_HELRO	T1EFW4	T1FSL1	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.900
T1EFW4_HELRO	T1FXD5_HELRO	T1EFW4	T1FXD5	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.900
T1EFW4_HELRO	T1G3I8_HELRO	T1EFW4	T1G3I8	Uncharacterized protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.876
T1EFW4_HELRO	T1G749_HELRO	T1EFW4	T1G749	Uncharacterized protein.	FZ domain-containing protein.	0.912
T1EFW4_HELRO	T1G984_HELRO	T1EFW4	T1G984	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.907
T1EGR1_HELRO	T1EFW4_HELRO	T1EGR1	T1EFW4	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein.	0.907
T1EGR1_HELRO	T1F3D0_HELRO	T1EGR1	T1F3D0	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein.	0.941
T1EGR1_HELRO	T1G3I8_HELRO	T1EGR1	T1G3I8	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.876
T1EGR1_HELRO	T1G749_HELRO	T1EGR1	T1G749	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	FZ domain-containing protein.	0.900
T1F3D0_HELRO	T1EFW4_HELRO	T1F3D0	T1EFW4	Uncharacterized protein.	Uncharacterized protein.	0.436
T1F3D0_HELRO	T1EGR1_HELRO	T1F3D0	T1EGR1	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.941
T1F3D0_HELRO	T1FSL1_HELRO	T1F3D0	T1FSL1	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.941
T1F3D0_HELRO	T1FXD5_HELRO	T1F3D0	T1FXD5	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.941
T1F3D0_HELRO	T1G3I8_HELRO	T1F3D0	T1G3I8	Uncharacterized protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.741
T1F3D0_HELRO	T1G749_HELRO	T1F3D0	T1G749	Uncharacterized protein.	FZ domain-containing protein.	0.436
T1F3D0_HELRO	T1G984_HELRO	T1F3D0	T1G984	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.941
T1F6E5_HELRO	T1G3I8_HELRO	T1F6E5	T1G3I8	Uncharacterized protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.918
T1FSL1_HELRO	T1EFW4_HELRO	T1FSL1	T1EFW4	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein.	0.900