STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T1G4Z1_HELROUncharacterized protein. (92 aa)    
Predicted Functional Partners:
T1G3I5_HELRO
Uncharacterized protein.
    
 0.699
T1FM77_HELRO
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.693
T1G378_HELRO
Uncharacterized protein.
   
 0.683
T1ETM3_HELRO
RNA_pol_L_2 domain-containing protein.
   
 0.664
T1FX03_HELRO
Uncharacterized protein.
   
 0.652
T1G647_HELRO
RPOLD domain-containing protein.
   
 0.615
T1G664_HELRO
RPOLD domain-containing protein.
   
 0.615
T1FSU9_HELRO
Uncharacterized protein.
    
 0.605
T1EYY0_HELRO
Uncharacterized protein.
    
 0.601
T1FSY2_HELRO
RuvB-like helicase; Belongs to the RuvB family.
    
 0.596
Your Current Organism:
Helobdella robusta
NCBI taxonomy Id: 6412
Other names: H. robusta
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