STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T1G8K9_HELRORab-GAP TBC domain-containing protein. (213 aa)    
Predicted Functional Partners:
T1FMD9_HELRO
Uncharacterized protein.
     
 0.693
T1G4Y3_HELRO
Uncharacterized protein.
     
 0.693
T1FPL9_HELRO
Rab-GAP TBC domain-containing protein.
      
 0.581
T1EV64_HELRO
Uncharacterized protein.
      
 0.566
T1G353_HELRO
Rab-GAP TBC domain-containing protein.
      
 0.560
T1EGC1_HELRO
Rab-GAP TBC domain-containing protein.
      
 0.556
T1FZM1_HELRO
DUF2013 domain-containing protein.
   
    0.539
T1FZU4_HELRO
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
 
      0.517
T1FWH1_HELRO
Rab-GAP TBC domain-containing protein.
      
 0.483
T1G6L5_HELRO
Rab-GAP TBC domain-containing protein.
   
  
0.443
Your Current Organism:
Helobdella robusta
NCBI taxonomy Id: 6412
Other names: H. robusta
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