STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER98057.1Small-conductance mechanosensitive channel. (546 aa)    
Predicted Functional Partners:
SER98041.1
SSU ribosomal protein S6P modification protein.
 
     0.723
SER98080.1
FeS assembly SUF system protein.
       0.590
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.583
SER46530.1
Protein of unknown function.
  
     0.578
SER74950.1
Putative membrane protein.
  
     0.517
SER68101.1
Uncharacterized conserved protein, DUF2252 family.
  
     0.484
SER74924.1
Hypothetical protein.
  
     0.479
SES15553.1
Kef-type potassium/proton antiporter, CPA2 family.
     
 0.461
SER96442.1
PRC-barrel domain-containing protein.
  
     0.458
SER98020.1
Ferritin-like metal-binding protein YciE.
       0.432
Your Current Organism:
Roseivivax roseus
NCBI taxonomy Id: 641238
Other names: DSM 23042, KCTC 22650, R. roseus, Roseivivax roseus Zhang et al. 2014, Roseivivax sp. BH87090, strain BH87090
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.