SES07196.1 protein (Roseivivax roseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SES07196.1

Ligand-gated ion channel. (375 aa)

Predicted Functional Partners:

SES37636.1

0.884

SER53662.1

0.847

SER99483.1

0.847

SES37646.1

0.800

SES41818.1

0.757

SER70483.1

0.755

cysC

0.698

SER99647.1

0.674

SER72204.1

0.636

SES33792.1

0.626

Your Current Organism:

Roseivivax roseus

NCBI taxonomy Id: 641238
Other names: DSM 23042, KCTC 22650, R. roseus, Roseivivax roseus Zhang et al. 2014, Roseivivax sp. BH87090, strain BH87090

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SER53662.1	SER70483.1	SAMN04490244_101411	SAMN04490244_102215	PAS domain S-box-containing protein.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.999
SER53662.1	SER99483.1	SAMN04490244_101411	SAMN04490244_104322	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SER53662.1	SES07196.1	SAMN04490244_101411	SAMN04490244_105195	PAS domain S-box-containing protein.	Ligand-gated ion channel.	0.847
SER53662.1	SES37636.1	SAMN04490244_101411	SAMN04490244_11373	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SER53662.1	SES37646.1	SAMN04490244_101411	SAMN04490244_11374	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SER53662.1	cysC	SAMN04490244_101411	SAMN04490244_102317	PAS domain S-box-containing protein.	Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.	0.605
SER70483.1	SER53662.1	SAMN04490244_102215	SAMN04490244_101411	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.999
SER70483.1	SER99483.1	SAMN04490244_102215	SAMN04490244_104322	Two-component system, chemotaxis family, CheB/CheR fusion protein.	PAS domain S-box-containing protein.	0.999
SER70483.1	SES07196.1	SAMN04490244_102215	SAMN04490244_105195	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Ligand-gated ion channel.	0.755
SER70483.1	SES37636.1	SAMN04490244_102215	SAMN04490244_11373	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Signal transduction histidine kinase.	0.999
SER70483.1	SES37646.1	SAMN04490244_102215	SAMN04490244_11374	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Hpt domain-containing protein.	0.999
SER70483.1	cysC	SAMN04490244_102215	SAMN04490244_102317	Two-component system, chemotaxis family, CheB/CheR fusion protein.	Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.	0.409
SER72204.1	SES07196.1	SAMN04490244_102282	SAMN04490244_105195	Prephenate dehydrogenase.	Ligand-gated ion channel.	0.636
SER99483.1	SER53662.1	SAMN04490244_104322	SAMN04490244_101411	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SER99483.1	SER70483.1	SAMN04490244_104322	SAMN04490244_102215	PAS domain S-box-containing protein.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.999
SER99483.1	SES07196.1	SAMN04490244_104322	SAMN04490244_105195	PAS domain S-box-containing protein.	Ligand-gated ion channel.	0.847
SER99483.1	SES37636.1	SAMN04490244_104322	SAMN04490244_11373	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SER99483.1	SES37646.1	SAMN04490244_104322	SAMN04490244_11374	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SER99483.1	cysC	SAMN04490244_104322	SAMN04490244_102317	PAS domain S-box-containing protein.	Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.	0.599
SER99647.1	SES07196.1	SAMN04490244_104329	SAMN04490244_105195	Amino acid ABC transporter membrane protein, PAAT family.	Ligand-gated ion channel.	0.674