SES35807.1 protein (Roseivivax roseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SES35807.1

TRAP transporter, DctM subunit. (440 aa)

Predicted Functional Partners:

SES35785.1

0.896

SES35795.1

0.855

SER70919.1

0.770

SES35835.1

0.744

SES35822.1

0.732

SER84548.1

0.703

SES35843.1

0.702

SES41353.1

0.702

SER73294.1

0.670

SER79728.1

0.651

Your Current Organism:

Roseivivax roseus

NCBI taxonomy Id: 641238
Other names: DSM 23042, KCTC 22650, R. roseus, Roseivivax roseus Zhang et al. 2014, Roseivivax sp. BH87090, strain BH87090

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SER70919.1	SES35807.1	SAMN04490244_102232	SAMN04490244_11233	Tripartite ATP-independent transporter solute receptor, DctP family.	TRAP transporter, DctM subunit.	0.770
SER73294.1	SES35807.1	SAMN04490244_102332	SAMN04490244_11233	Tripartite ATP-independent transporter solute receptor, DctP family.	TRAP transporter, DctM subunit.	0.670
SER79728.1	SES35807.1	SAMN04490244_10312	SAMN04490244_11233	Tripartite ATP-independent transporter solute receptor, DctP family.	TRAP transporter, DctM subunit.	0.651
SER84548.1	SES35785.1	SAMN04490244_103213	SAMN04490244_11231	C4-dicarboxylate-binding protein DctP.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.677
SER84548.1	SES35807.1	SAMN04490244_103213	SAMN04490244_11233	C4-dicarboxylate-binding protein DctP.	TRAP transporter, DctM subunit.	0.703
SES35785.1	SER84548.1	SAMN04490244_11231	SAMN04490244_103213	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	C4-dicarboxylate-binding protein DctP.	0.677
SES35785.1	SES35795.1	SAMN04490244_11231	SAMN04490244_11232	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	0.619
SES35785.1	SES35807.1	SAMN04490244_11231	SAMN04490244_11233	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP transporter, DctM subunit.	0.896
SES35785.1	SES35822.1	SAMN04490244_11231	SAMN04490244_11234	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Dihydroorotase.	0.577
SES35785.1	SES35835.1	SAMN04490244_11231	SAMN04490244_11235	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Aminoacrylate hydrolase.	0.523
SES35785.1	SES35843.1	SAMN04490244_11231	SAMN04490244_11236	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	D-serine deaminase, pyridoxal phosphate-dependent.	0.503
SES35795.1	SES35785.1	SAMN04490244_11232	SAMN04490244_11231	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.619
SES35795.1	SES35807.1	SAMN04490244_11232	SAMN04490244_11233	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	TRAP transporter, DctM subunit.	0.855
SES35795.1	SES35822.1	SAMN04490244_11232	SAMN04490244_11234	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	Dihydroorotase.	0.764
SES35795.1	SES35835.1	SAMN04490244_11232	SAMN04490244_11235	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	Aminoacrylate hydrolase.	0.732
SES35795.1	SES35843.1	SAMN04490244_11232	SAMN04490244_11236	TRAP-type mannitol/chloroaromatic compound transport system, small permease component.	D-serine deaminase, pyridoxal phosphate-dependent.	0.702
SES35807.1	SER70919.1	SAMN04490244_11233	SAMN04490244_102232	TRAP transporter, DctM subunit.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.770
SES35807.1	SER73294.1	SAMN04490244_11233	SAMN04490244_102332	TRAP transporter, DctM subunit.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.670
SES35807.1	SER79728.1	SAMN04490244_11233	SAMN04490244_10312	TRAP transporter, DctM subunit.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.651
SES35807.1	SER84548.1	SAMN04490244_11233	SAMN04490244_103213	TRAP transporter, DctM subunit.	C4-dicarboxylate-binding protein DctP.	0.703