SES37274.1 protein (Roseivivax roseus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SES37274.1

Amino acid ABC transporter ATP-binding protein, PAAT family. (244 aa)

Predicted Functional Partners:

SES37250.1

0.996

SES37261.1

0.984

SES41818.1

0.967

SER99647.1

0.949

SES33792.1

0.938

SES37163.1

0.932

SES37174.1

0.927

SES41811.1

0.898

SES31795.1

0.882

SES33779.1

0.871

Your Current Organism:

Roseivivax roseus

NCBI taxonomy Id: 641238
Other names: DSM 23042, KCTC 22650, R. roseus, Roseivivax roseus Zhang et al. 2014, Roseivivax sp. BH87090, strain BH87090

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SER99647.1	SES33779.1	SAMN04490244_104329	SAMN04490244_11120	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.980
SER99647.1	SES33792.1	SAMN04490244_104329	SAMN04490244_11121	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.481
SER99647.1	SES37163.1	SAMN04490244_104329	SAMN04490244_11325	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.480
SER99647.1	SES37174.1	SAMN04490244_104329	SAMN04490244_11326	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.518
SER99647.1	SES37250.1	SAMN04490244_104329	SAMN04490244_11333	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.945
SER99647.1	SES37261.1	SAMN04490244_104329	SAMN04490244_11334	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.470
SER99647.1	SES37274.1	SAMN04490244_104329	SAMN04490244_11335	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.949
SER99647.1	SES41811.1	SAMN04490244_104329	SAMN04490244_11941	Amino acid ABC transporter membrane protein, PAAT family.	Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.	0.723
SER99647.1	SES41818.1	SAMN04490244_104329	SAMN04490244_11942	Amino acid ABC transporter membrane protein, PAAT family.	L-glutamine ABC transporter membrane protein.	0.883
SES31795.1	SES33779.1	SAMN04490244_11082	SAMN04490244_11120	Amino acid ABC transporter membrane protein 2, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.829
SES31795.1	SES37174.1	SAMN04490244_11082	SAMN04490244_11326	Amino acid ABC transporter membrane protein 2, PAAT family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.742
SES31795.1	SES37250.1	SAMN04490244_11082	SAMN04490244_11333	Amino acid ABC transporter membrane protein 2, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.754
SES31795.1	SES37274.1	SAMN04490244_11082	SAMN04490244_11335	Amino acid ABC transporter membrane protein 2, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.882
SES31795.1	SES41811.1	SAMN04490244_11082	SAMN04490244_11941	Amino acid ABC transporter membrane protein 2, PAAT family.	Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.	0.823
SES31795.1	SES41818.1	SAMN04490244_11082	SAMN04490244_11942	Amino acid ABC transporter membrane protein 2, PAAT family.	L-glutamine ABC transporter membrane protein.	0.589
SES33779.1	SER99647.1	SAMN04490244_11120	SAMN04490244_104329	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.980
SES33779.1	SES31795.1	SAMN04490244_11120	SAMN04490244_11082	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.829
SES33779.1	SES33792.1	SAMN04490244_11120	SAMN04490244_11121	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.986
SES33779.1	SES37163.1	SAMN04490244_11120	SAMN04490244_11325	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.941
SES33779.1	SES37174.1	SAMN04490244_11120	SAMN04490244_11326	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.882