gskip protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gskip

Gsk3b interacting protein. (133 aa)

Predicted Functional Partners:

LOC113154201

0.838

gsk3b

0.838

gsk3a

0.838

fam91a1

0.709

cluh

0.695

ENSATEP00000035971

0.682

ENSATEP00000025960

0.632

hbs1l

0.631

rps6

0.605

rxylt1

0.549

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000025960	cluh	ENSATEP00000025960	ENSATEP00000014895	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	0.605
ENSATEP00000025960	gskip	ENSATEP00000025960	ENSATEP00000001120	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Gsk3b interacting protein.	0.632
ENSATEP00000025960	rxylt1	ENSATEP00000025960	ENSATEP00000026096	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Ribitol xylosyltransferase 1.	0.573
ENSATEP00000035971	cluh	ENSATEP00000035971	ENSATEP00000014895	Zgc:153240.	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	0.669
ENSATEP00000035971	fam91a1	ENSATEP00000035971	ENSATEP00000021019	Zgc:153240.	Family with sequence similarity 91 member A1.	0.995
ENSATEP00000035971	gskip	ENSATEP00000035971	ENSATEP00000001120	Zgc:153240.	Gsk3b interacting protein.	0.682
ENSATEP00000035971	rxylt1	ENSATEP00000035971	ENSATEP00000026096	Zgc:153240.	Ribitol xylosyltransferase 1.	0.489
LOC113154201	gskip	ENSATEP00000001077	ENSATEP00000001120	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	Gsk3b interacting protein.	0.838
cluh	ENSATEP00000025960	ENSATEP00000014895	ENSATEP00000025960	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.605
cluh	ENSATEP00000035971	ENSATEP00000014895	ENSATEP00000035971	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	Zgc:153240.	0.669
cluh	fam91a1	ENSATEP00000014895	ENSATEP00000021019	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	Family with sequence similarity 91 member A1.	0.680
cluh	gskip	ENSATEP00000014895	ENSATEP00000001120	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	Gsk3b interacting protein.	0.695
cluh	rps6	ENSATEP00000014895	ENSATEP00000024773	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.595
cluh	rxylt1	ENSATEP00000014895	ENSATEP00000026096	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	Ribitol xylosyltransferase 1.	0.522
fam91a1	ENSATEP00000035971	ENSATEP00000021019	ENSATEP00000035971	Family with sequence similarity 91 member A1.	Zgc:153240.	0.995
fam91a1	cluh	ENSATEP00000021019	ENSATEP00000014895	Family with sequence similarity 91 member A1.	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.	0.680
fam91a1	gskip	ENSATEP00000021019	ENSATEP00000001120	Family with sequence similarity 91 member A1.	Gsk3b interacting protein.	0.709
fam91a1	rxylt1	ENSATEP00000021019	ENSATEP00000026096	Family with sequence similarity 91 member A1.	Ribitol xylosyltransferase 1.	0.408
gsk3a	gskip	ENSATEP00000028523	ENSATEP00000001120	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.	Gsk3b interacting protein.	0.838
gsk3b	gskip	ENSATEP00000017217	ENSATEP00000001120	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	Gsk3b interacting protein.	0.838