Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113156696Uncharacterized protein. (252 aa)    
Predicted Functional Partners:
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
  0.885
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.789
ENSATEP00000019551
CHM Rab escort protein.
    
 0.774
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.750
ENSATEP00000031903
TSR1 ribosome maturation factor.
      
 0.676
ENSATEP00000017873
Zinc finger, MYND-type containing 11.
      
 0.506
tbc1d25
TBC1 domain family, member 25.
      
 0.469
rab30
RAB30, member RAS oncogene family.
   
 
  0.460
rab2a
RAB2A, member RAS oncogene family.
     
  0.446
LOC113163741
Uncharacterized protein.
     
 0.445
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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