LOC113161127 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113161127

Sidoreflexin. (325 aa)

Predicted Functional Partners:

LOC113171092

0.820

LOC113171704

0.820

rab11a

0.820

LOC113152832

0.820

LOC113152082

0.820

rab11fip2

0.803

LOC113150373

0.760

LOC113160036

0.750

rab25

0.716

LOC113155496

0.716

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113150373	LOC113152082	ENSATEP00000033776	ENSATEP00000034544	Uncharacterized protein.	RAB11B, member RAS oncogene family, a.	0.962
LOC113150373	LOC113152832	ENSATEP00000033776	ENSATEP00000034538	Uncharacterized protein.	RAB11B, member RAS oncogene family, b.	0.962
LOC113150373	LOC113155496	ENSATEP00000033776	ENSATEP00000021386	Uncharacterized protein.	RAB25, member RAS oncogene family a.	0.805
LOC113150373	LOC113160036	ENSATEP00000033776	ENSATEP00000001917	Uncharacterized protein.	FIP-RBD domain-containing protein.	0.871
LOC113150373	LOC113161127	ENSATEP00000033776	ENSATEP00000001895	Uncharacterized protein.	Sidoreflexin.	0.760
LOC113150373	LOC113171092	ENSATEP00000033776	ENSATEP00000008773	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.984
LOC113150373	LOC113171704	ENSATEP00000033776	ENSATEP00000025490	Uncharacterized protein.	Uncharacterized protein.	0.962
LOC113150373	rab11a	ENSATEP00000033776	ENSATEP00000032714	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.963
LOC113150373	rab11fip2	ENSATEP00000033776	ENSATEP00000016594	Uncharacterized protein.	RAB11 family interacting protein 2 (class I).	0.872
LOC113150373	rab25	ENSATEP00000033776	ENSATEP00000008735	Uncharacterized protein.	RAB25, member RAS oncogene family b.	0.805
LOC113152082	LOC113150373	ENSATEP00000034544	ENSATEP00000033776	RAB11B, member RAS oncogene family, a.	Uncharacterized protein.	0.962
LOC113152082	LOC113155496	ENSATEP00000034544	ENSATEP00000021386	RAB11B, member RAS oncogene family, a.	RAB25, member RAS oncogene family a.	0.492
LOC113152082	LOC113160036	ENSATEP00000034544	ENSATEP00000001917	RAB11B, member RAS oncogene family, a.	FIP-RBD domain-containing protein.	0.959
LOC113152082	LOC113161127	ENSATEP00000034544	ENSATEP00000001895	RAB11B, member RAS oncogene family, a.	Sidoreflexin.	0.820
LOC113152082	LOC113171092	ENSATEP00000034544	ENSATEP00000008773	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family, like.	0.870
LOC113152082	rab11a	ENSATEP00000034544	ENSATEP00000032714	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family.	0.870
LOC113152082	rab11fip2	ENSATEP00000034544	ENSATEP00000016594	RAB11B, member RAS oncogene family, a.	RAB11 family interacting protein 2 (class I).	0.962
LOC113152082	rab25	ENSATEP00000034544	ENSATEP00000008735	RAB11B, member RAS oncogene family, a.	RAB25, member RAS oncogene family b.	0.492
LOC113152832	LOC113150373	ENSATEP00000034538	ENSATEP00000033776	RAB11B, member RAS oncogene family, b.	Uncharacterized protein.	0.962
LOC113152832	LOC113155496	ENSATEP00000034538	ENSATEP00000021386	RAB11B, member RAS oncogene family, b.	RAB25, member RAS oncogene family a.	0.492