rnf19b protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnf19b

RBR-type E3 ubiquitin transferase. (733 aa)

Predicted Functional Partners:

trappc2

0.914

ENSATEP00000008835

0.791

uckl1

0.759

LOC113149304

0.759

ENSATEP00000034674

0.759

rnf216

0.732

uba52

0.721

LOC113159502

0.695

cgrrf1

0.689

ENSATEP00000007947

0.686

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000007947	rnf19b	ENSATEP00000007947	ENSATEP00000002206	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.686
ENSATEP00000008835	LOC113159502	ENSATEP00000008835	ENSATEP00000002743	Ubiquitin B.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.685
ENSATEP00000008835	rnf19b	ENSATEP00000008835	ENSATEP00000002206	Ubiquitin B.	RBR-type E3 ubiquitin transferase.	0.791
ENSATEP00000008835	rnf216	ENSATEP00000008835	ENSATEP00000009755	Ubiquitin B.	Ring finger protein 216.	0.947
ENSATEP00000008835	trappc2	ENSATEP00000008835	ENSATEP00000019219	Ubiquitin B.	Trafficking protein particle complex 2.	0.561
ENSATEP00000008835	uba52	ENSATEP00000008835	ENSATEP00000024125	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSATEP00000034674	rnf19b	ENSATEP00000034674	ENSATEP00000002206	Uridine-cytidine kinase; Belongs to the uridine kinase family.	RBR-type E3 ubiquitin transferase.	0.759
ENSATEP00000034674	uba52	ENSATEP00000034674	ENSATEP00000024125	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.504
LOC113149304	rnf19b	ENSATEP00000033016	ENSATEP00000002206	Uridine-cytidine kinase; Belongs to the uridine kinase family.	RBR-type E3 ubiquitin transferase.	0.759
LOC113149304	uba52	ENSATEP00000033016	ENSATEP00000024125	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.504
LOC113159502	ENSATEP00000008835	ENSATEP00000002743	ENSATEP00000008835	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin B.	0.685
LOC113159502	rnf19b	ENSATEP00000002743	ENSATEP00000002206	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RBR-type E3 ubiquitin transferase.	0.695
LOC113159502	rnf216	ENSATEP00000002743	ENSATEP00000009755	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ring finger protein 216.	0.920
LOC113159502	uba52	ENSATEP00000002743	ENSATEP00000024125	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.979
cgrrf1	rnf19b	ENSATEP00000020295	ENSATEP00000002206	Cell growth regulator with ring finger domain 1.	RBR-type E3 ubiquitin transferase.	0.689
cgrrf1	uba52	ENSATEP00000020295	ENSATEP00000024125	Cell growth regulator with ring finger domain 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.463
rnf19b	ENSATEP00000007947	ENSATEP00000002206	ENSATEP00000007947	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.686
rnf19b	ENSATEP00000008835	ENSATEP00000002206	ENSATEP00000008835	RBR-type E3 ubiquitin transferase.	Ubiquitin B.	0.791
rnf19b	ENSATEP00000034674	ENSATEP00000002206	ENSATEP00000034674	RBR-type E3 ubiquitin transferase.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.759
rnf19b	LOC113149304	ENSATEP00000002206	ENSATEP00000033016	RBR-type E3 ubiquitin transferase.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.759