LOC113157848 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113157848

Apoptotic chromatin condensation inducer 1b. (1204 aa)

Predicted Functional Partners:

LOC113158179

0.992

sap18

0.986

ENSATEP00000013690

0.984

eif4a3

0.969

ENSATEP00000001176

0.959

ENSATEP00000027815

0.958

magoh

0.940

alyref

0.939

rbm8a

0.932

prpf40a

0.900

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001176	ENSATEP00000013690	ENSATEP00000001176	ENSATEP00000013690	RNA binding protein with serine rich domain 1.	Pinin, desmosome associated protein.	0.962
ENSATEP00000001176	ENSATEP00000027815	ENSATEP00000001176	ENSATEP00000027815	RNA binding protein with serine rich domain 1.	Serine/arginine repetitive matrix 2.	0.623
ENSATEP00000001176	LOC113157848	ENSATEP00000001176	ENSATEP00000002338	RNA binding protein with serine rich domain 1.	Apoptotic chromatin condensation inducer 1b.	0.959
ENSATEP00000001176	LOC113158179	ENSATEP00000001176	ENSATEP00000035299	RNA binding protein with serine rich domain 1.	RNA binding protein S1, serine-rich domain.	0.547
ENSATEP00000001176	alyref	ENSATEP00000001176	ENSATEP00000006125	RNA binding protein with serine rich domain 1.	Aly/REF export factor.	0.755
ENSATEP00000001176	eif4a3	ENSATEP00000001176	ENSATEP00000021347	RNA binding protein with serine rich domain 1.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.970
ENSATEP00000001176	magoh	ENSATEP00000001176	ENSATEP00000012236	RNA binding protein with serine rich domain 1.	Mago homolog, exon junction complex subunit.	0.935
ENSATEP00000001176	rbm8a	ENSATEP00000001176	ENSATEP00000008059	RNA binding protein with serine rich domain 1.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.957
ENSATEP00000001176	sap18	ENSATEP00000001176	ENSATEP00000008803	RNA binding protein with serine rich domain 1.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.979
ENSATEP00000013690	ENSATEP00000001176	ENSATEP00000013690	ENSATEP00000001176	Pinin, desmosome associated protein.	RNA binding protein with serine rich domain 1.	0.962
ENSATEP00000013690	ENSATEP00000027815	ENSATEP00000013690	ENSATEP00000027815	Pinin, desmosome associated protein.	Serine/arginine repetitive matrix 2.	0.850
ENSATEP00000013690	LOC113157848	ENSATEP00000013690	ENSATEP00000002338	Pinin, desmosome associated protein.	Apoptotic chromatin condensation inducer 1b.	0.984
ENSATEP00000013690	LOC113158179	ENSATEP00000013690	ENSATEP00000035299	Pinin, desmosome associated protein.	RNA binding protein S1, serine-rich domain.	0.999
ENSATEP00000013690	alyref	ENSATEP00000013690	ENSATEP00000006125	Pinin, desmosome associated protein.	Aly/REF export factor.	0.827
ENSATEP00000013690	eif4a3	ENSATEP00000013690	ENSATEP00000021347	Pinin, desmosome associated protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.993
ENSATEP00000013690	magoh	ENSATEP00000013690	ENSATEP00000012236	Pinin, desmosome associated protein.	Mago homolog, exon junction complex subunit.	0.985
ENSATEP00000013690	prpf40a	ENSATEP00000013690	ENSATEP00000028506	Pinin, desmosome associated protein.	PRP40 pre-mRNA processing factor 40 homolog A.	0.907
ENSATEP00000013690	rbm8a	ENSATEP00000013690	ENSATEP00000008059	Pinin, desmosome associated protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.810
ENSATEP00000013690	sap18	ENSATEP00000013690	ENSATEP00000008803	Pinin, desmosome associated protein.	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.	0.999
ENSATEP00000027815	ENSATEP00000001176	ENSATEP00000027815	ENSATEP00000001176	Serine/arginine repetitive matrix 2.	RNA binding protein with serine rich domain 1.	0.623