Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSATEP00000002544E2F_TDP domain-containing protein. (88 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
  
 0.968
rbl1
Retinoblastoma-like 1 (p107).
   
 0.937
ENSATEP00000020215
Retinoblastoma 1.
   
 0.937
LOC113165496
Retinoblastoma-like 2 (p130).
   
 0.936
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.742
SMAD4
Mothers against decapentaplegic homolog.
    
 0.723
LOC113158812
Mothers against decapentaplegic homolog.
    
 0.723
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.712
LOC113154561
Mothers against decapentaplegic homolog.
    
 0.699
ENSATEP00000026002
MH1 domain-containing protein.
    
 0.699
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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