nudt21 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nudt21

Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)

Predicted Functional Partners:

pcf11

0.995

cpsf6

0.991

cpsf7

0.989

LOC113162522

0.988

cpsf4

0.980

cstf2

0.953

ENSATEP00000025458

0.950

cstf1

0.945

magoh

0.924

YTHDC2

0.924

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000025458	LOC113162522	ENSATEP00000025458	ENSATEP00000031561	Cleavage and polyadenylation specificity factor subunit 2.	FIP1 like 1b (S. cerevisiae).	0.999
ENSATEP00000025458	YTHDC2	ENSATEP00000025458	ENSATEP00000015755	Cleavage and polyadenylation specificity factor subunit 2.	YTH domain containing 2.	0.976
ENSATEP00000025458	cpsf4	ENSATEP00000025458	ENSATEP00000009989	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specific factor 4.	0.999
ENSATEP00000025458	cpsf6	ENSATEP00000025458	ENSATEP00000021351	Cleavage and polyadenylation specificity factor subunit 2.	RRM domain-containing protein.	0.855
ENSATEP00000025458	cpsf7	ENSATEP00000025458	ENSATEP00000011361	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specific factor 7.	0.855
ENSATEP00000025458	cstf1	ENSATEP00000025458	ENSATEP00000006593	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage stimulation factor, 3' pre-RNA, subunit 1.	0.996
ENSATEP00000025458	cstf2	ENSATEP00000025458	ENSATEP00000026242	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.994
ENSATEP00000025458	nudt21	ENSATEP00000025458	ENSATEP00000003274	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.950
ENSATEP00000025458	pcf11	ENSATEP00000025458	ENSATEP00000015507	Cleavage and polyadenylation specificity factor subunit 2.	PCF11 cleavage and polyadenylation factor subunit.	0.996
LOC113162522	ENSATEP00000025458	ENSATEP00000031561	ENSATEP00000025458	FIP1 like 1b (S. cerevisiae).	Cleavage and polyadenylation specificity factor subunit 2.	0.999
LOC113162522	YTHDC2	ENSATEP00000031561	ENSATEP00000015755	FIP1 like 1b (S. cerevisiae).	YTH domain containing 2.	0.964
LOC113162522	cpsf4	ENSATEP00000031561	ENSATEP00000009989	FIP1 like 1b (S. cerevisiae).	Cleavage and polyadenylation specific factor 4.	0.999
LOC113162522	cpsf6	ENSATEP00000031561	ENSATEP00000021351	FIP1 like 1b (S. cerevisiae).	RRM domain-containing protein.	0.807
LOC113162522	cpsf7	ENSATEP00000031561	ENSATEP00000011361	FIP1 like 1b (S. cerevisiae).	Cleavage and polyadenylation specific factor 7.	0.807
LOC113162522	cstf1	ENSATEP00000031561	ENSATEP00000006593	FIP1 like 1b (S. cerevisiae).	Cleavage stimulation factor, 3' pre-RNA, subunit 1.	0.989
LOC113162522	cstf2	ENSATEP00000031561	ENSATEP00000026242	FIP1 like 1b (S. cerevisiae).	Cleavage stimulation factor, 3' pre-RNA, subunit 2.	0.994
LOC113162522	nudt21	ENSATEP00000031561	ENSATEP00000003274	FIP1 like 1b (S. cerevisiae).	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.988
LOC113162522	pcf11	ENSATEP00000031561	ENSATEP00000015507	FIP1 like 1b (S. cerevisiae).	PCF11 cleavage and polyadenylation factor subunit.	0.993
YTHDC2	ENSATEP00000025458	ENSATEP00000015755	ENSATEP00000025458	YTH domain containing 2.	Cleavage and polyadenylation specificity factor subunit 2.	0.976
YTHDC2	LOC113162522	ENSATEP00000015755	ENSATEP00000031561	YTH domain containing 2.	FIP1 like 1b (S. cerevisiae).	0.964

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About