Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTCFCCCTC-binding factor. (762 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 
 0.866
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.857
suz12
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.817
LOC113158272
VEFS-Box domain-containing protein.
   
 0.817
rpl31
Ribosomal protein L31.
    
   0.792
pum3
Pumilio RNA-binding family member 3.
    
   0.757
LOC113160500
Ribosomal protein L26.
    
   0.746
rpl14
Ribosomal protein L14.
    
   0.731
ENSATEP00000008865
Nucleophosmin 1b.
    
 
 0.731
LOC113170977
Nucleophosmin 1a.
    
 
 0.731
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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