hbegf protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hbegf

Heparin-binding EGF-like growth factor a. (225 aa)

Predicted Functional Partners:

ENSATEP00000005557

0.948

LOC113148193

0.948

LOC113172631

0.939

erbb3

0.939

egfr

0.939

LOC113163507

0.939

ENSATEP00000023501

0.939

ENSATEP00000032358

0.930

mmp9

0.911

ENSATEP00000023360

0.885

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000005557	hbegf	ENSATEP00000005557	ENSATEP00000003945	ADAM metallopeptidase domain 17b.	Heparin-binding EGF-like growth factor a.	0.948
ENSATEP00000005557	mmp9	ENSATEP00000005557	ENSATEP00000029260	ADAM metallopeptidase domain 17b.	Matrix metallopeptidase 9.	0.408
ENSATEP00000023360	ENSATEP00000023501	ENSATEP00000023360	ENSATEP00000023501	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.836
ENSATEP00000023360	hbegf	ENSATEP00000023360	ENSATEP00000003945	Receptor protein-tyrosine kinase.	Heparin-binding EGF-like growth factor a.	0.885
ENSATEP00000023501	ENSATEP00000023360	ENSATEP00000023501	ENSATEP00000023360	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.836
ENSATEP00000023501	LOC113172631	ENSATEP00000023501	ENSATEP00000000585	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.871
ENSATEP00000023501	erbb3	ENSATEP00000023501	ENSATEP00000003230	Uncharacterized protein.	Protein kinase domain-containing protein.	0.871
ENSATEP00000023501	hbegf	ENSATEP00000023501	ENSATEP00000003945	Uncharacterized protein.	Heparin-binding EGF-like growth factor a.	0.939
ENSATEP00000032358	LOC113172631	ENSATEP00000032358	ENSATEP00000000585	Erb-b2 receptor tyrosine kinase 3b.	Receptor protein-tyrosine kinase.	0.871
ENSATEP00000032358	erbb3	ENSATEP00000032358	ENSATEP00000003230	Erb-b2 receptor tyrosine kinase 3b.	Protein kinase domain-containing protein.	0.871
ENSATEP00000032358	hbegf	ENSATEP00000032358	ENSATEP00000003945	Erb-b2 receptor tyrosine kinase 3b.	Heparin-binding EGF-like growth factor a.	0.930
LOC113148193	hbegf	ENSATEP00000021015	ENSATEP00000003945	ADAM metallopeptidase domain 17a.	Heparin-binding EGF-like growth factor a.	0.948
LOC113148193	mmp9	ENSATEP00000021015	ENSATEP00000029260	ADAM metallopeptidase domain 17a.	Matrix metallopeptidase 9.	0.408
LOC113163507	egfr	ENSATEP00000023317	ENSATEP00000005752	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.872
LOC113163507	hbegf	ENSATEP00000023317	ENSATEP00000003945	Receptor protein-tyrosine kinase.	Heparin-binding EGF-like growth factor a.	0.939
LOC113163507	mmp9	ENSATEP00000023317	ENSATEP00000029260	Receptor protein-tyrosine kinase.	Matrix metallopeptidase 9.	0.438
LOC113172631	ENSATEP00000023501	ENSATEP00000000585	ENSATEP00000023501	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.871
LOC113172631	ENSATEP00000032358	ENSATEP00000000585	ENSATEP00000032358	Receptor protein-tyrosine kinase.	Erb-b2 receptor tyrosine kinase 3b.	0.871
LOC113172631	hbegf	ENSATEP00000000585	ENSATEP00000003945	Receptor protein-tyrosine kinase.	Heparin-binding EGF-like growth factor a.	0.939
egfr	LOC113163507	ENSATEP00000005752	ENSATEP00000023317	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.872