Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC113172219WW domain-containing protein. (530 aa)    
Predicted Functional Partners:
LOC113160747
E3 ubiquitin protein ligase.
   
 0.928
rnf40
E3 ubiquitin protein ligase.
   
 0.928
LOC113149256
RNA binding motif protein 25b.
   
 0.924
LOC113148138
RNA binding motif protein 25a.
   
 0.924
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.853
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.843
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
   0.816
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.815
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 
 0.813
ENSATEP00000030794
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 
 0.813
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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