Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113157560Uncharacterized protein. (573 aa)    
Predicted Functional Partners:
ENSATEP00000026206
RRM domain-containing protein.
  
 
 0.664
PABPN1L
Poly(A) binding protein nuclear 1 like, cytoplasmic.
  
 0.659
sf3b1
Splicing factor 3b, subunit 1.
   
 0.649
LOC113155992
Serine and arginine rich splicing factor 2a.
  
 
 0.646
pabpn1
Poly(A) binding protein, nuclear 1.
  
 0.622
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.620
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.619
ENSATEP00000022686
Malate synthase-like.
    
  0.614
ENSATEP00000032886
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
 0.600
ENSATEP00000032894
Small nuclear ribonucleoprotein polypeptide F.
   
 0.589
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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