Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smad9Mothers against decapentaplegic homolog. (465 aa)    
Predicted Functional Partners:
SMAD4
Mothers against decapentaplegic homolog.
   
0.978
LOC113158812
Mothers against decapentaplegic homolog.
   
0.978
yap1
Yes-associated protein 1.
    
 0.977
ENSATEP00000026002
MH1 domain-containing protein.
  
0.977
LOC113154561
Mothers against decapentaplegic homolog.
   
0.976
ENSATEP00000034474
LEM domain containing 3.
    
 0.975
LOC113147794
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.972
smad6
Mothers against decapentaplegic homolog.
    
0.968
smad7
Mothers against decapentaplegic homolog.
    
0.968
LOC113174672
Mothers against decapentaplegic homolog.
    
0.968
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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