LOC113171540 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113171540

Synovial sarcoma, X breakpoint 2 interacting protein a. (598 aa)

Predicted Functional Partners:

ENSATEP00000031795

0.886

ENSATEP00000015102

0.872

actn3

0.853

ACTN4

0.853

LOC113159842

0.853

LOC113147980

0.853

trmt112

0.630

ENSATEP00000003823

0.610

exd3

0.474

ENSATEP00000011003

0.466

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	ENSATEP00000015102	ENSATEP00000006892	ENSATEP00000015102	Actinin alpha 4.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.853
ACTN4	LOC113171540	ENSATEP00000006892	ENSATEP00000005290	Actinin alpha 4.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.853
ENSATEP00000003823	ENSATEP00000015102	ENSATEP00000003823	ENSATEP00000015102	FTO alpha-ketoglutarate dependent dioxygenase.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.610
ENSATEP00000003823	LOC113171540	ENSATEP00000003823	ENSATEP00000005290	FTO alpha-ketoglutarate dependent dioxygenase.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.610
ENSATEP00000011003	ENSATEP00000015102	ENSATEP00000011003	ENSATEP00000015102	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.466
ENSATEP00000011003	LOC113171540	ENSATEP00000011003	ENSATEP00000005290	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.466
ENSATEP00000015102	ACTN4	ENSATEP00000015102	ENSATEP00000006892	Synovial sarcoma, X breakpoint 2 interacting protein b.	Actinin alpha 4.	0.853
ENSATEP00000015102	ENSATEP00000003823	ENSATEP00000015102	ENSATEP00000003823	Synovial sarcoma, X breakpoint 2 interacting protein b.	FTO alpha-ketoglutarate dependent dioxygenase.	0.610
ENSATEP00000015102	ENSATEP00000011003	ENSATEP00000015102	ENSATEP00000011003	Synovial sarcoma, X breakpoint 2 interacting protein b.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.466
ENSATEP00000015102	ENSATEP00000031795	ENSATEP00000015102	ENSATEP00000031795	Synovial sarcoma, X breakpoint 2 interacting protein b.	Afadin, adherens junction formation factor a.	0.886
ENSATEP00000015102	LOC113147980	ENSATEP00000015102	ENSATEP00000031213	Synovial sarcoma, X breakpoint 2 interacting protein b.	Actinin, alpha 1.	0.853
ENSATEP00000015102	LOC113159842	ENSATEP00000015102	ENSATEP00000013236	Synovial sarcoma, X breakpoint 2 interacting protein b.	Actinin, alpha 2b.	0.853
ENSATEP00000015102	LOC113171540	ENSATEP00000015102	ENSATEP00000005290	Synovial sarcoma, X breakpoint 2 interacting protein b.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.872
ENSATEP00000015102	actn3	ENSATEP00000015102	ENSATEP00000004534	Synovial sarcoma, X breakpoint 2 interacting protein b.	Actinin alpha 3b.	0.853
ENSATEP00000015102	exd3	ENSATEP00000015102	ENSATEP00000028880	Synovial sarcoma, X breakpoint 2 interacting protein b.	Exonuclease 3'-5' domain containing 3.	0.474
ENSATEP00000015102	trmt112	ENSATEP00000015102	ENSATEP00000021018	Synovial sarcoma, X breakpoint 2 interacting protein b.	tRNA methyltransferase subunit 11-2.	0.630
ENSATEP00000031795	ENSATEP00000015102	ENSATEP00000031795	ENSATEP00000015102	Afadin, adherens junction formation factor a.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.886
ENSATEP00000031795	LOC113171540	ENSATEP00000031795	ENSATEP00000005290	Afadin, adherens junction formation factor a.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.886
LOC113147980	ENSATEP00000015102	ENSATEP00000031213	ENSATEP00000015102	Actinin, alpha 1.	Synovial sarcoma, X breakpoint 2 interacting protein b.	0.853
LOC113147980	LOC113171540	ENSATEP00000031213	ENSATEP00000005290	Actinin, alpha 1.	Synovial sarcoma, X breakpoint 2 interacting protein a.	0.853