TUT4 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TUT4

Terminal uridylyl transferase 4. (1508 aa)

Predicted Functional Partners:

LOC113169668

0.859

dis3l2

0.787

polr2g

0.776

polr2c

0.766

polr2f

0.766

polr2h

0.766

polr2b

0.766

POLR2E

0.766

polr2i

0.761

papolg

0.741

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113169668	POLR2E	ENSATEP00000014643	ENSATEP00000034585	Lin-28 homolog A.	RNA polymerase II subunit E.	0.571
LOC113169668	TUT4	ENSATEP00000014643	ENSATEP00000005389	Lin-28 homolog A.	Terminal uridylyl transferase 4.	0.859
LOC113169668	dis3l2	ENSATEP00000014643	ENSATEP00000004732	Lin-28 homolog A.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.590
LOC113169668	polr2b	ENSATEP00000014643	ENSATEP00000028209	Lin-28 homolog A.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.594
LOC113169668	polr2c	ENSATEP00000014643	ENSATEP00000010127	Lin-28 homolog A.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.598
LOC113169668	polr2f	ENSATEP00000014643	ENSATEP00000012781	Lin-28 homolog A.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.514
LOC113169668	polr2g	ENSATEP00000014643	ENSATEP00000019227	Lin-28 homolog A.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.572
LOC113169668	polr2h	ENSATEP00000014643	ENSATEP00000019013	Lin-28 homolog A.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.571
LOC113169668	polr2i	ENSATEP00000014643	ENSATEP00000001068	Lin-28 homolog A.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.435
POLR2E	LOC113169668	ENSATEP00000034585	ENSATEP00000014643	RNA polymerase II subunit E.	Lin-28 homolog A.	0.571
POLR2E	TUT4	ENSATEP00000034585	ENSATEP00000005389	RNA polymerase II subunit E.	Terminal uridylyl transferase 4.	0.766
POLR2E	polr2b	ENSATEP00000034585	ENSATEP00000028209	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR2E	polr2c	ENSATEP00000034585	ENSATEP00000010127	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.999
POLR2E	polr2f	ENSATEP00000034585	ENSATEP00000012781	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
POLR2E	polr2g	ENSATEP00000034585	ENSATEP00000019227	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.999
POLR2E	polr2h	ENSATEP00000034585	ENSATEP00000019013	RNA polymerase II subunit E.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
POLR2E	polr2i	ENSATEP00000034585	ENSATEP00000001068	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
TUT4	LOC113169668	ENSATEP00000005389	ENSATEP00000014643	Terminal uridylyl transferase 4.	Lin-28 homolog A.	0.859
TUT4	POLR2E	ENSATEP00000005389	ENSATEP00000034585	Terminal uridylyl transferase 4.	RNA polymerase II subunit E.	0.766
TUT4	dis3l2	ENSATEP00000005389	ENSATEP00000004732	Terminal uridylyl transferase 4.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.787