Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf111Ring finger protein 111. (1029 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin-related modifier.
   
 0.872
LOC113162884
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.831
ube2n
Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.831
smad6
Mothers against decapentaplegic homolog.
   
 0.828
smad7
Mothers against decapentaplegic homolog.
   
 0.828
LOC113174672
Mothers against decapentaplegic homolog.
   
 0.828
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.758
rps27a
Ubiquitin-like domain-containing protein.
    
 0.757
cdc26
Cell division cycle 26 homolog.
     
 0.739
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
    
  0.728
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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