LOC113152354 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113152354

Uncharacterized protein. (530 aa)

Predicted Functional Partners:

nr1h3

0.975

med1

0.958

ppard

0.950

PPARG

0.943

nr1i2

0.926

LOC113167322

0.892

ENSATEP00000031232

0.892

PPARA

0.888

ENSATEP00000009080

0.882

ENSATEP00000010381

0.882

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000009080	ENSATEP00000031232	ENSATEP00000009080	ENSATEP00000031232	GPS2_interact domain-containing protein.	Nuclear receptor subfamily 1, group H, member 4.	0.868
ENSATEP00000009080	LOC113152354	ENSATEP00000009080	ENSATEP00000005674	GPS2_interact domain-containing protein.	Uncharacterized protein.	0.882
ENSATEP00000009080	LOC113167322	ENSATEP00000009080	ENSATEP00000006644	GPS2_interact domain-containing protein.	Nuclear receptor subfamily 1, group H, member 5.	0.868
ENSATEP00000009080	PPARA	ENSATEP00000009080	ENSATEP00000028685	GPS2_interact domain-containing protein.	Peroxisome proliferator-activated receptor alpha b.	0.890
ENSATEP00000009080	PPARG	ENSATEP00000009080	ENSATEP00000036358	GPS2_interact domain-containing protein.	Peroxisome proliferator activated receptor gamma.	0.891
ENSATEP00000009080	med1	ENSATEP00000009080	ENSATEP00000032683	GPS2_interact domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.669
ENSATEP00000009080	nr1h3	ENSATEP00000009080	ENSATEP00000030098	GPS2_interact domain-containing protein.	Nuclear receptor subfamily 1, group H, member 3.	0.893
ENSATEP00000009080	nr1i2	ENSATEP00000009080	ENSATEP00000017170	GPS2_interact domain-containing protein.	Nuclear receptor subfamily 1, group I, member 2.	0.787
ENSATEP00000009080	ppard	ENSATEP00000009080	ENSATEP00000029799	GPS2_interact domain-containing protein.	Peroxisome proliferator-activated receptor delta b.	0.880
ENSATEP00000010381	ENSATEP00000031232	ENSATEP00000010381	ENSATEP00000031232	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 1, group H, member 4.	0.868
ENSATEP00000010381	LOC113152354	ENSATEP00000010381	ENSATEP00000005674	Nuclear receptor corepressor 1.	Uncharacterized protein.	0.882
ENSATEP00000010381	LOC113167322	ENSATEP00000010381	ENSATEP00000006644	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 1, group H, member 5.	0.868
ENSATEP00000010381	PPARA	ENSATEP00000010381	ENSATEP00000028685	Nuclear receptor corepressor 1.	Peroxisome proliferator-activated receptor alpha b.	0.890
ENSATEP00000010381	PPARG	ENSATEP00000010381	ENSATEP00000036358	Nuclear receptor corepressor 1.	Peroxisome proliferator activated receptor gamma.	0.891
ENSATEP00000010381	med1	ENSATEP00000010381	ENSATEP00000032683	Nuclear receptor corepressor 1.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.669
ENSATEP00000010381	nr1h3	ENSATEP00000010381	ENSATEP00000030098	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 1, group H, member 3.	0.893
ENSATEP00000010381	nr1i2	ENSATEP00000010381	ENSATEP00000017170	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 1, group I, member 2.	0.787
ENSATEP00000010381	ppard	ENSATEP00000010381	ENSATEP00000029799	Nuclear receptor corepressor 1.	Peroxisome proliferator-activated receptor delta b.	0.880
ENSATEP00000031232	ENSATEP00000009080	ENSATEP00000031232	ENSATEP00000009080	Nuclear receptor subfamily 1, group H, member 4.	GPS2_interact domain-containing protein.	0.868
ENSATEP00000031232	ENSATEP00000010381	ENSATEP00000031232	ENSATEP00000010381	Nuclear receptor subfamily 1, group H, member 4.	Nuclear receptor corepressor 1.	0.868