Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113158106Uncharacterized protein. (203 aa)    
Predicted Functional Partners:
LOC113162347
Heme-binding protein soul4.
      
 0.717
pef1
Penta-EF-hand domain containing 1.
    
   0.600
pdcd6
Programmed cell death 6.
    
   0.600
cthrc1
Collagen triple helix repeat containing 1b.
      
 0.511
ENSATEP00000015323
Leucine-rich pentatricopeptide repeat containing.
    
 
 0.452
LOC113148765
Inhibitor of DNA binding 3.
   
    0.412
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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