usp32 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

usp32

Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family. (1599 aa)

Predicted Functional Partners:

traf6

0.700

gpr153

0.686

usp10

0.675

pcna

0.671

mysm1

0.661

ENSATEP00000013013

0.658

uba52

0.658

rps27a

0.641

ENSATEP00000008810

0.630

ENSATEP00000008835

0.630

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000008810	gpr153	ENSATEP00000008810	ENSATEP00000018458	Uncharacterized protein.	G protein-coupled receptor 153.	0.502
ENSATEP00000008810	mysm1	ENSATEP00000008810	ENSATEP00000024163	Uncharacterized protein.	Myb-like, SWIRM and MPN domains 1.	0.995
ENSATEP00000008810	pcna	ENSATEP00000008810	ENSATEP00000029027	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.957
ENSATEP00000008810	rps27a	ENSATEP00000008810	ENSATEP00000031192	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.984
ENSATEP00000008810	traf6	ENSATEP00000008810	ENSATEP00000030620	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.960
ENSATEP00000008810	uba52	ENSATEP00000008810	ENSATEP00000024125	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSATEP00000008810	usp10	ENSATEP00000008810	ENSATEP00000006019	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.806
ENSATEP00000008810	usp32	ENSATEP00000008810	ENSATEP00000006060	Uncharacterized protein.	Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.	0.630
ENSATEP00000008835	gpr153	ENSATEP00000008835	ENSATEP00000018458	Ubiquitin B.	G protein-coupled receptor 153.	0.502
ENSATEP00000008835	mysm1	ENSATEP00000008835	ENSATEP00000024163	Ubiquitin B.	Myb-like, SWIRM and MPN domains 1.	0.995
ENSATEP00000008835	pcna	ENSATEP00000008835	ENSATEP00000029027	Ubiquitin B.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.958
ENSATEP00000008835	rps27a	ENSATEP00000008835	ENSATEP00000031192	Ubiquitin B.	Ubiquitin-like domain-containing protein.	0.998
ENSATEP00000008835	traf6	ENSATEP00000008835	ENSATEP00000030620	Ubiquitin B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.979
ENSATEP00000008835	uba52	ENSATEP00000008835	ENSATEP00000024125	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSATEP00000008835	usp10	ENSATEP00000008835	ENSATEP00000006019	Ubiquitin B.	Ubiquitin carboxyl-terminal hydrolase.	0.818
ENSATEP00000008835	usp32	ENSATEP00000008835	ENSATEP00000006060	Ubiquitin B.	Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.	0.630
ENSATEP00000013013	usp32	ENSATEP00000013013	ENSATEP00000006060	Ring finger protein 123.	Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.	0.658
gpr153	ENSATEP00000008810	ENSATEP00000018458	ENSATEP00000008810	G protein-coupled receptor 153.	Uncharacterized protein.	0.502
gpr153	ENSATEP00000008835	ENSATEP00000018458	ENSATEP00000008835	G protein-coupled receptor 153.	Ubiquitin B.	0.502
gpr153	mysm1	ENSATEP00000018458	ENSATEP00000024163	G protein-coupled receptor 153.	Myb-like, SWIRM and MPN domains 1.	0.634