Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1a. (267 aa)    
Predicted Functional Partners:
ENSATEP00000020741
Aristaless related homeobox a.
   
 
 0.950
srf
Serum response factor b.
    
 0.859
LOC113162031
MADS-box domain-containing protein.
    
 0.859
ENSATEP00000008390
Collagen, type VI, alpha 1.
   
  
 0.759
TIMP3
TIMP metallopeptidase inhibitor 3.
   
  
 0.720
atoh8
BHLH domain-containing protein.
      
 0.709
ALX3
ALX homeobox 3.
   
 
 0.708
ubxn11
UBX domain protein 11.
      
 0.708
LOC113171785
Collagen, type VI, alpha 2.
   
  
 0.701
COL6A2
Collagen type VI alpha 2 chain.
   
  
 0.701
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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