Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113149242Transcription factor SOX. (385 aa)    
Predicted Functional Partners:
hoxc6
Homeobox C6a.
    
 0.715
ENSATEP00000009017
SRY-box transcription factor 5.
   
 0.709
ENSATEP00000017990
Transcription factor 7.
    
 0.694
egr3
Early growth response 3.
    
 0.691
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.658
lef1
Lymphoid enhancer-binding factor 1.
    
 0.602
LOC113148425
POU domain protein.
    
 0.585
sox13
SRY-box transcription factor 13.
    
 0.584
LOC113158638
HMG box domain-containing protein.
    
 0.570
tcf7l2
Transcription factor 7 like 2.
    
 0.570
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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