LOC113160135 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113160135

Germ cell nuclear acidic peptidase. (613 aa)

Predicted Functional Partners:

ENSATEP00000015956

0.805

rrn3

0.779

ENSATEP00000028496

0.759

ENSATEP00000001734

0.742

glod5

0.742

taf1c

0.742

HINT1

0.742

tbpl1

0.722

ENSATEP00000018707

0.722

LOC113148680

0.722

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000001734	ENSATEP00000018707	ENSATEP00000001734	ENSATEP00000018707	Histidine triad nucleotide binding protein 2.	Uncharacterized protein.	0.779
ENSATEP00000001734	LOC113148680	ENSATEP00000001734	ENSATEP00000020380	Histidine triad nucleotide binding protein 2.	TATA box binding protein like 2.	0.779
ENSATEP00000001734	LOC113160135	ENSATEP00000001734	ENSATEP00000006607	Histidine triad nucleotide binding protein 2.	Germ cell nuclear acidic peptidase.	0.742
ENSATEP00000001734	rrn3	ENSATEP00000001734	ENSATEP00000011185	Histidine triad nucleotide binding protein 2.	RRN3 homolog, RNA polymerase I transcription factor.	0.817
ENSATEP00000001734	tbpl1	ENSATEP00000001734	ENSATEP00000006710	Histidine triad nucleotide binding protein 2.	TBP-like 1.	0.613
ENSATEP00000015956	LOC113160135	ENSATEP00000015956	ENSATEP00000006607	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Germ cell nuclear acidic peptidase.	0.805
ENSATEP00000018707	ENSATEP00000001734	ENSATEP00000018707	ENSATEP00000001734	Uncharacterized protein.	Histidine triad nucleotide binding protein 2.	0.779
ENSATEP00000018707	HINT1	ENSATEP00000018707	ENSATEP00000014981	Uncharacterized protein.	Histidine triad nucleotide binding protein 1.	0.779
ENSATEP00000018707	LOC113148680	ENSATEP00000018707	ENSATEP00000020380	Uncharacterized protein.	TATA box binding protein like 2.	0.853
ENSATEP00000018707	LOC113160135	ENSATEP00000018707	ENSATEP00000006607	Uncharacterized protein.	Germ cell nuclear acidic peptidase.	0.722
ENSATEP00000018707	glod5	ENSATEP00000018707	ENSATEP00000007148	Uncharacterized protein.	Glyoxalase domain containing 5.	0.613
ENSATEP00000018707	rrn3	ENSATEP00000018707	ENSATEP00000011185	Uncharacterized protein.	RRN3 homolog, RNA polymerase I transcription factor.	0.813
ENSATEP00000018707	taf1c	ENSATEP00000018707	ENSATEP00000009792	Uncharacterized protein.	Wu:fj64h06.	0.779
ENSATEP00000018707	tbpl1	ENSATEP00000018707	ENSATEP00000006710	Uncharacterized protein.	TBP-like 1.	0.891
ENSATEP00000028496	LOC113160135	ENSATEP00000028496	ENSATEP00000006607	SprT-like N-terminal domain.	Germ cell nuclear acidic peptidase.	0.759
HINT1	ENSATEP00000018707	ENSATEP00000014981	ENSATEP00000018707	Histidine triad nucleotide binding protein 1.	Uncharacterized protein.	0.779
HINT1	LOC113148680	ENSATEP00000014981	ENSATEP00000020380	Histidine triad nucleotide binding protein 1.	TATA box binding protein like 2.	0.779
HINT1	LOC113160135	ENSATEP00000014981	ENSATEP00000006607	Histidine triad nucleotide binding protein 1.	Germ cell nuclear acidic peptidase.	0.742
HINT1	rrn3	ENSATEP00000014981	ENSATEP00000011185	Histidine triad nucleotide binding protein 1.	RRN3 homolog, RNA polymerase I transcription factor.	0.817
HINT1	tbpl1	ENSATEP00000014981	ENSATEP00000006710	Histidine triad nucleotide binding protein 1.	TBP-like 1.	0.613