LOC113148979 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113148979

Uncharacterized protein. (91 aa)

Predicted Functional Partners:

ENSATEP00000003923

0.708

arpc2

0.659

asb8

0.648

tbck

0.604

tmem192

0.517

txndc11

0.514

ENSATEP00000002499

0.486

rab27a

0.486

LOC113148157

0.486

LOC113160268

0.467

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSATEP00000002499	LOC113148979	ENSATEP00000002499	ENSATEP00000006943	Uncharacterized protein.	Uncharacterized protein.	0.486
ENSATEP00000003923	LOC113148979	ENSATEP00000003923	ENSATEP00000006943	Uncharacterized protein.	Uncharacterized protein.	0.708
LOC113148157	LOC113148979	ENSATEP00000008418	ENSATEP00000006943	RAB27B, member RAS oncogene family.	Uncharacterized protein.	0.486
LOC113148979	ENSATEP00000002499	ENSATEP00000006943	ENSATEP00000002499	Uncharacterized protein.	Uncharacterized protein.	0.486
LOC113148979	ENSATEP00000003923	ENSATEP00000006943	ENSATEP00000003923	Uncharacterized protein.	Uncharacterized protein.	0.708
LOC113148979	LOC113148157	ENSATEP00000006943	ENSATEP00000008418	Uncharacterized protein.	RAB27B, member RAS oncogene family.	0.486
LOC113148979	LOC113160268	ENSATEP00000006943	ENSATEP00000000914	Uncharacterized protein.	Zgc:101583.	0.467
LOC113148979	arpc2	ENSATEP00000006943	ENSATEP00000026629	Uncharacterized protein.	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.659
LOC113148979	asb8	ENSATEP00000006943	ENSATEP00000030028	Uncharacterized protein.	Ankyrin repeat and SOCS box containing 8.	0.648
LOC113148979	rab27a	ENSATEP00000006943	ENSATEP00000003383	Uncharacterized protein.	RAB27A, member RAS oncogene family.	0.486
LOC113148979	tbck	ENSATEP00000006943	ENSATEP00000022260	Uncharacterized protein.	TBC1 domain containing kinase.	0.604
LOC113148979	tmem192	ENSATEP00000006943	ENSATEP00000016790	Uncharacterized protein.	Transmembrane protein 192.	0.517
LOC113148979	txndc11	ENSATEP00000006943	ENSATEP00000006358	Uncharacterized protein.	Thioredoxin domain containing 11.	0.514
LOC113160268	LOC113148979	ENSATEP00000000914	ENSATEP00000006943	Zgc:101583.	Uncharacterized protein.	0.467
LOC113160268	asb8	ENSATEP00000000914	ENSATEP00000030028	Zgc:101583.	Ankyrin repeat and SOCS box containing 8.	0.634
LOC113160268	tmem192	ENSATEP00000000914	ENSATEP00000016790	Zgc:101583.	Transmembrane protein 192.	0.519
arpc2	LOC113148979	ENSATEP00000026629	ENSATEP00000006943	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Uncharacterized protein.	0.659
arpc2	tmem192	ENSATEP00000026629	ENSATEP00000016790	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Transmembrane protein 192.	0.824
asb8	LOC113148979	ENSATEP00000030028	ENSATEP00000006943	Ankyrin repeat and SOCS box containing 8.	Uncharacterized protein.	0.648
asb8	LOC113160268	ENSATEP00000030028	ENSATEP00000000914	Ankyrin repeat and SOCS box containing 8.	Zgc:101583.	0.634