STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp13Ubiquitinyl hydrolase 1. (1010 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.962
rps27a
Ubiquitin-like domain-containing protein.
    
 0.961
ENSATEP00000008835
Ubiquitin B.
    
 0.952
ENSATEP00000008810
Uncharacterized protein.
    
 0.947
ENSATEP00000001091
Ubiquitin-like domain-containing protein.
    
 0.805
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.804
usp10
Ubiquitin carboxyl-terminal hydrolase.
     
 0.803
zfand4
Zinc finger, AN1-type domain 4.
    
 0.777
ENSATEP00000000919
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.775
ENSATEP00000001982
Ubiquitin-like domain-containing protein.
    
 0.775
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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