LOC113172925 protein (Anabas testudineus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113172925

FCP1 homology domain-containing protein. (1077 aa)

Predicted Functional Partners:

gtf2f1

0.879

polr2g

0.798

timm23

0.793

polr2d

0.774

TIMM21

0.765

polr1c

0.732

polr2c

0.732

polr2f

0.731

POLR2E

0.722

supt5h

0.712

Your Current Organism:

Anabas testudineus

NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC113172925	POLR2E	ENSATEP00000014617	ENSATEP00000034585	FCP1 homology domain-containing protein.	RNA polymerase II subunit E.	0.722
LOC113172925	TIMM21	ENSATEP00000014617	ENSATEP00000020039	FCP1 homology domain-containing protein.	Translocase of inner mitochondrial membrane 21.	0.765
LOC113172925	gtf2f1	ENSATEP00000014617	ENSATEP00000036153	FCP1 homology domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.879
LOC113172925	polr1c	ENSATEP00000014617	ENSATEP00000008562	FCP1 homology domain-containing protein.	RNA polymerase I and III subunit C.	0.732
LOC113172925	polr2c	ENSATEP00000014617	ENSATEP00000010127	FCP1 homology domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.732
LOC113172925	polr2d	ENSATEP00000014617	ENSATEP00000029579	FCP1 homology domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.774
LOC113172925	polr2f	ENSATEP00000014617	ENSATEP00000012781	FCP1 homology domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.731
LOC113172925	polr2g	ENSATEP00000014617	ENSATEP00000019227	FCP1 homology domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.798
LOC113172925	supt5h	ENSATEP00000014617	ENSATEP00000003860	FCP1 homology domain-containing protein.	Transcription elongation factor SPT5.	0.712
LOC113172925	timm23	ENSATEP00000014617	ENSATEP00000006147	FCP1 homology domain-containing protein.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.793
POLR2E	LOC113172925	ENSATEP00000034585	ENSATEP00000014617	RNA polymerase II subunit E.	FCP1 homology domain-containing protein.	0.722
POLR2E	gtf2f1	ENSATEP00000034585	ENSATEP00000036153	RNA polymerase II subunit E.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.992
POLR2E	polr1c	ENSATEP00000034585	ENSATEP00000008562	RNA polymerase II subunit E.	RNA polymerase I and III subunit C.	0.999
POLR2E	polr2c	ENSATEP00000034585	ENSATEP00000010127	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.999
POLR2E	polr2d	ENSATEP00000034585	ENSATEP00000029579	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.999
POLR2E	polr2f	ENSATEP00000034585	ENSATEP00000012781	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
POLR2E	polr2g	ENSATEP00000034585	ENSATEP00000019227	RNA polymerase II subunit E.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.999
POLR2E	supt5h	ENSATEP00000034585	ENSATEP00000003860	RNA polymerase II subunit E.	Transcription elongation factor SPT5.	0.998
TIMM21	LOC113172925	ENSATEP00000020039	ENSATEP00000014617	Translocase of inner mitochondrial membrane 21.	FCP1 homology domain-containing protein.	0.765
TIMM21	timm23	ENSATEP00000020039	ENSATEP00000006147	Translocase of inner mitochondrial membrane 21.	Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.992