STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkx6-1NK6 homeobox 1. (324 aa)    
Predicted Functional Partners:
pdx1
Pancreatic and duodenal homeobox 1.
   
0.566
ENSATEP00000017000
Neurogenin 3.
   
  
 0.551
LOC113173444
Oligodendrocyte lineage transcription factor 2.
   
  
 0.524
ptf1a
Pancreas associated transcription factor 1a.
      
 0.522
nr5a2
Nuclear receptor subfamily 5, group A, member 2.
      
 0.479
ENSATEP00000007401
Neuronal differentiation 1.
   
  
 0.473
ENSATEP00000026613
Glucagon b.
      
 0.463
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
  
 0.439
onecut1
One cut domain family member.
   
 
 0.424
Your Current Organism:
Anabas testudineus
NCBI taxonomy Id: 64144
Other names: A. testudineus, Amphiprion testudineus, Anthias testudineus, Antias testudineus, climbing perch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.