STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGB13714.1TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: dsa:Desal_1621 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family. (427 aa)    
Predicted Functional Partners:
EGB13713.1
PFAM: Peptidase M23; KEGG: dsa:Desal_1622 peptidase M23.
  
  
 0.873
EGB13715.1
PFAM: protein of unknown function DUF610 YibQ; KEGG: dsa:Desal_1620 protein of unknown function DUF610 YibQ.
       0.756
prmA
Ribosomal L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
     0.712
EGB13712.1
KEGG: drt:Dret_2157 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein.
       0.671
EGB13849.1
KEGG: dba:Dbac_1044 pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
   0.606
EGB14205.1
KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
   0.606
EGB16069.1
KEGG: dba:Dbac_1044 pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
   0.606
EGB15291.1
KEGG: mbn:Mboo_1172 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
  
 
 0.600
EGB13345.1
Protein of unknown function DUF1555; KEGG: mno:Mnod_1330 outer membrane autotransporter barrel domain protein; PFAM: protein of unknown function DUF1555; SMART: Nidogen extracellular domain protein.
  
   0.578
EGB15476.1
KEGG: dsa:Desal_3831 hypothetical protein.
  
   0.578
Your Current Organism:
Desulfovibrio desulfuricans ND132
NCBI taxonomy Id: 641491
Other names: D. desulfuricans ND132, Desulfovibrio [desulfuricans] ND132, Desulfovibrio desulfuricans str. ND132, Desulfovibrio desulfuricans strain ND132, Desulfovibrio sp. ND132
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