STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR71523.1TonB-dependent receptor. (1313 aa)    
Predicted Functional Partners:
EPR66763.1
Beta-lactamase.
  
     0.729
EPR71806.1
Beta-lactamase.
  
     0.693
EPR69568.1
Prolyl oligopeptidase family protein.
  
     0.652
EPR71475.1
Hypothetical protein.
  
     0.632
EPR69206.1
Putative secreted protein.
  
  
  0.615
EPR71336.1
Hypothetical protein.
  
     0.601
EPR69617.1
Putative esterase.
  
     0.597
EPR69228.1
Hypothetical protein.
  
     0.569
EPR68632.1
Hypothetical protein.
  
     0.557
EPR65097.1
Alfa-L-rhamnosidase.
  
     0.554
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.