STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcDExonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (410 aa)    
Predicted Functional Partners:
EPR71488.1
Exonuclease SbcC.
 0.999
EPR71489.1
Exonuclease SbcC.
 0.998
EPR65915.1
DNA polymerase I; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
   
 0.974
EPR65916.1
DNA polymerase I; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
   
 0.974
EPR65917.1
DNA polymerase I; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
   
 0.974
EPR66894.1
ATP-dependent DNA helicase RecQ.
  
 0.954
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.754
EPR70844.1
Peroxidase.
    
 0.739
EPR69599.1
ATP-dependent DNA helicase RecQ.
  
 0.688
EPR70947.1
mRNA 3-end processing factor.
   
  0.673
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.