STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR69053.1TonB-dependent receptor. (1092 aa)    
Predicted Functional Partners:
EPR69052.1
Hypothetical protein.
 
     0.935
EPR67299.1
Putative nutrient binding outer membrane protein.
  
 
   0.782
EPR71343.1
Hypothetical protein.
  
     0.773
EPR69049.1
Hypothetical protein.
  
     0.773
EPR71367.1
Putative nutrient binding outer membrane protein.
  
 
   0.766
EPR65714.1
Hypothetical protein.
  
     0.764
EPR69848.1
Hypothetical protein.
  
     0.762
EPR67658.1
Putative nutrient binding outer membrane protein.
  
 
   0.761
EPR67640.1
Putative nutrient binding outer membrane protein.
  
 
   0.756
EPR65569.1
Putative outer membrane protein.
  
 
   0.755
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.