STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR68949.1Single-stranded-DNA-specific exonuclease RecJ. (194 aa)    
Predicted Functional Partners:
EPR68948.1
Single-stranded-DNA-specific exonuclease RecJ.
     0.994
EPR68947.1
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
       0.773
EPR68946.1
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
       0.709
priA
Helicase PriA essential for oriC/DnaA-independent DNA replication; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
 
     0.699
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
  
  
 0.611
EPR68945.1
Putative auxin-regulated protein.
       0.607
EPR67481.1
Single-stranded DNA-binding protein.
  
 
 0.598
EPR67408.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
   
 0.554
EPR66405.1
Single-stranded DNA-binding protein.
  
 
 0.539
EPR68950.1
Hypothetical protein.
       0.536
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.