EPR68518.1 protein (Cyclobacterium qasimii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EPR68518.1

Hypothetical protein. (197 aa)

Predicted Functional Partners:

EPR68015.1

0.742

EPR67904.1

0.737

EPR69569.1

0.696

EPR65401.1

0.695

aroK

0.694

EPR66473.1

0.685

EPR66474.1

0.685

EPR66408.1

0.675

EPR66409.1

0.675

EPR66410.1

0.675

Your Current Organism:

Cyclobacterium qasimii

NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPR65401.1	EPR68518.1	ADICYQ_5610	ADICYQ_2484	N-Acetylneuraminate cytidylyltransferase.	Hypothetical protein.	0.695
EPR66408.1	EPR66409.1	ADICYQ_4542	ADICYQ_4543	Glutamate synthase [NADPH] large chain.	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	0.999
EPR66408.1	EPR66410.1	ADICYQ_4542	ADICYQ_4544	Glutamate synthase [NADPH] large chain.	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	0.999
EPR66408.1	EPR66473.1	ADICYQ_4542	ADICYQ_4607	Glutamate synthase [NADPH] large chain.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66408.1	EPR66474.1	ADICYQ_4542	ADICYQ_4608	Glutamate synthase [NADPH] large chain.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66408.1	EPR67904.1	ADICYQ_4542	ADICYQ_2976	Glutamate synthase [NADPH] large chain.	NADP-dependent malic enzyme.	0.434
EPR66408.1	EPR68518.1	ADICYQ_4542	ADICYQ_2484	Glutamate synthase [NADPH] large chain.	Hypothetical protein.	0.675
EPR66408.1	EPR69569.1	ADICYQ_4542	ADICYQ_1354	Glutamate synthase [NADPH] large chain.	Aromatic-L-amino-acid decarboxylase.	0.753
EPR66409.1	EPR66408.1	ADICYQ_4543	ADICYQ_4542	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Glutamate synthase [NADPH] large chain.	0.999
EPR66409.1	EPR66410.1	ADICYQ_4543	ADICYQ_4544	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	0.999
EPR66409.1	EPR66473.1	ADICYQ_4543	ADICYQ_4607	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66409.1	EPR66474.1	ADICYQ_4543	ADICYQ_4608	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66409.1	EPR67904.1	ADICYQ_4543	ADICYQ_2976	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	NADP-dependent malic enzyme.	0.434
EPR66409.1	EPR68518.1	ADICYQ_4543	ADICYQ_2484	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Hypothetical protein.	0.675
EPR66409.1	EPR69569.1	ADICYQ_4543	ADICYQ_1354	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Aromatic-L-amino-acid decarboxylase.	0.753
EPR66410.1	EPR66408.1	ADICYQ_4544	ADICYQ_4542	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Glutamate synthase [NADPH] large chain.	0.999
EPR66410.1	EPR66409.1	ADICYQ_4544	ADICYQ_4543	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	0.999
EPR66410.1	EPR66473.1	ADICYQ_4544	ADICYQ_4607	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66410.1	EPR66474.1	ADICYQ_4544	ADICYQ_4608	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	Enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.	0.410
EPR66410.1	EPR67904.1	ADICYQ_4544	ADICYQ_2976	Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.	NADP-dependent malic enzyme.	0.434