STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR68411.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
EPR70844.1
Peroxidase.
   
 0.863
rplF
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.848
EPR68412.1
RNA polymerase sigma-54 factor RpoN.
       0.787
EPR68413.1
RNA polymerase sigma-54 factor RpoN.
       0.787
EPR70805.1
Long-chain-fatty-acid--CoA ligase.
  
 
  0.738
EPR69834.1
O-succinylbenzoic acid--CoA ligase.
    
  0.705
EPR66775.1
Long-chain-fatty-acid--CoA ligase.
    
  0.705
EPR69569.1
Aromatic-L-amino-acid decarboxylase.
    
 0.685
EPR65127.1
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.669
EPR66490.1
PorT-related protein.
  
     0.668
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.