STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR68150.1Zinc uptake regulation protein ZUR; Belongs to the Fur family. (149 aa)    
Predicted Functional Partners:
EPR66408.1
Glutamate synthase [NADPH] large chain.
    
 0.730
EPR66409.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.
    
 0.730
EPR66410.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.
    
 0.730
EPR66411.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name; Belongs to the glutamate synthase family.
    
 0.730
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.701
EPR66504.1
Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.
 
     0.616
EPR69916.1
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.503
EPR68482.1
Hypothetical protein.
  
     0.502
EPR67075.1
Adenylate cyclase.
  
 
 0.459
EPR67221.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.