STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR68156.1Putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
EPR66935.1
Long-chain-fatty-acid--CoA ligase.
  
 
 0.791
EPR68644.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.700
EPR69422.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.692
EPR67781.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
     
 0.665
EPR70844.1
Peroxidase.
  
 0.644
lpxC
N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
     
 0.631
EPR66408.1
Glutamate synthase [NADPH] large chain.
    
  0.630
EPR66409.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.
    
  0.630
EPR66410.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name.
    
  0.630
EPR66411.1
Glutamate synthase [NADPH] large chain; Overlaps another CDS with the same product name; Belongs to the glutamate synthase family.
    
  0.630
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.