STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR67934.1TonB-dependent receptor. (1087 aa)    
Predicted Functional Partners:
EPR67933.1
Hypothetical protein.
 
     0.876
EPR71694.1
Hypothetical protein.
  
     0.764
EPR66991.1
Putative nutrient binding outer membrane protein.
  
     0.756
EPR65855.1
Hypothetical protein.
  
     0.755
EPR66941.1
Putative nutrient binding outer membrane protein.
  
     0.723
EPR67640.1
Putative nutrient binding outer membrane protein.
  
     0.701
EPR67086.1
Putative nutrient binding outer membrane protein.
  
     0.680
EPR66743.1
Hypothetical protein.
  
     0.672
EPR69331.1
TonB-dependent receptor.
  
    0.666
EPR67147.1
Putative nutrient binding outer membrane protein; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
  
     0.660
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.