STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR67052.1TonB-dependent receptor. (914 aa)    
Predicted Functional Partners:
EPR67051.1
TonB-dependent receptor.
    0.950
EPR67050.1
Putative nutrient binding outer membrane protein.
 
     0.908
EPR71665.1
Hypothetical protein.
  
     0.769
EPR67034.1
Putative nutrient binding outer membrane protein.
  
     0.753
EPR71641.1
Putative nutrient binding outer membrane protein.
  
     0.720
EPR67299.1
Putative nutrient binding outer membrane protein.
  
     0.713
EPR65569.1
Putative outer membrane protein.
  
     0.713
EPR69541.1
TonB family protein; TonB-dependent receptor.
 
     0.712
EPR67735.1
Putative nutrient binding outer membrane protein.
  
     0.705
EPR66946.1
Putative nutrient binding outer membrane protein.
  
     0.705
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.