STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66889.1RNA polymerase sigma-70 factor, ECF subfamily. (411 aa)    
Predicted Functional Partners:
EPR66887.1
PhnB protein.
 
     0.949
EPR66888.1
Hypothetical protein.
 
     0.799
EPR66886.1
Hypothetical protein.
       0.681
EPR66885.1
Hypothetical protein.
       0.653
EPR71709.1
Outer membrane protein-like protein.
  
     0.459
EPR65321.1
Hypothetical protein.
 
     0.436
EPR69122.1
Hypothetical protein.
 
     0.401
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.