STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66706.1L,D-transpeptidase YcbB. (529 aa)    
Predicted Functional Partners:
EPR66705.1
Hypothetical protein.
 
  
 0.574
EPR66738.1
D-alanyl-D-alanine carboxypeptidase.
  
  
  0.568
EPR65691.1
D-alanyl-D-alanine carboxypeptidase.
     
  0.499
EPR66708.1
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase.
 
     0.493
EPR66707.1
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase.
       0.453
EPR66709.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
       0.400
EPR66710.1
Omega amidase.
       0.400
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.