STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66650.1S-layer domain protein. (285 aa)    
Predicted Functional Partners:
EPR66649.1
ABC-type multidrug transport system, ATPase component.
 
    0.954
EPR66648.1
ABC-type transport, permease protein.
 
    0.909
EPR71671.1
Flagellar motor rotation protein MotB.
    
  0.549
EPR70993.1
Outer membrane lipoprotein omp16 precursor.
    
  0.546
EPR65950.1
Outer membrane lipoprotein omp16 precursor; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
    
  0.536
EPR65951.1
Outer membrane lipoprotein omp16 precursor; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
    
  0.536
EPR65504.1
Beta-galactosidase.
  
     0.499
EPR68335.1
Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system').
  
 
   0.482
EPR66955.1
Hypothetical protein.
  
  
  0.471
EPR69642.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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