STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66453.1Lycopene cyclase. (303 aa)    
Predicted Functional Partners:
EPR66454.1
Putative lycopene cyclase.
     0.990
EPR69697.1
Phytoene dehydrogenase.
 
 
  0.664
EPR66935.1
Long-chain-fatty-acid--CoA ligase.
  
 
  0.664
EPR69372.1
Electron transfer flavoprotein, beta subunit.
  
 
 0.634
EPR65729.1
Beta-carotene hydroxylase.
 
  
 0.629
EPR66451.1
Hypothetical protein.
       0.566
EPR66452.1
Hypothetical protein.
       0.566
EPR66450.1
Hypothetical protein.
       0.505
EPR66455.1
D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.496
EPR70519.1
Multidrug efflux protein, outer membrane component.
  
     0.487
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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