STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66502.1GAF domain protein. (354 aa)    
Predicted Functional Partners:
EPR70552.1
Sensory box histidine kinase/response regulator.
 
 0.822
EPR70486.1
Histidine kinase.
 
 0.813
EPR70487.1
Hypothetical protein.
 
 
 0.801
EPR70960.1
Phytochrome, two-component sensor histidine kinase; Cyanobacterial phytochrome B.
 
  0.793
EPR65028.1
PAS domain protein.
  
 0.786
EPR68595.1
Signal transduction histidine kinase.
  
 0.781
EPR70550.1
Putative signal transduction histidine kinase.
 
 
0.775
EPR71355.1
Phytochrome, two-component sensor histidine kinase; Cyanobacterial phytochrome B.
  
 0.773
EPR66582.1
Chemotaxis protein methyltransferase CheR.
 
 
 0.734
EPR71374.1
PAS/PAC domain protein.
 
 0.726
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.