STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR65722.1L-seryl-tRNA(Sec) selenium transferase-related protein. (407 aa)    
Predicted Functional Partners:
EPR65721.1
Amidohydrolase.
 
    0.935
EPR65724.1
Amidohydrolase.
 
    0.902
EPR69148.1
Amidohydrolase.
 
    0.817
EPR66662.1
Amidohydrolase.
 
    0.817
EPR69149.1
Amidohydrolase.
 
    0.815
selD
Selenide,water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.813
EPR69441.1
Seryl-tRNA synthetase.
     
 0.804
EPR65848.1
RidA.
  
     0.723
EPR65727.1
L-sorbosone dehydrogenase; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
 
     0.694
EPR65725.1
Hypothetical protein.
 
     0.682
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.