STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR65500.1Sialidase. (385 aa)    
Predicted Functional Partners:
EPR68551.1
Hypothetical protein.
   
  0.588
EPR65101.1
Hypothetical protein.
   
  0.588
EPR71335.1
Sialidase.
  
  
  0.551
EPR69414.1
Putative sialic acid transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.543
EPR69932.1
Acetyl xylan esterase A.
  
     0.523
EPR69429.1
Sialidase; Overlaps CDS with the same product name; overlaps another CDS with the same product name.
  
     0.512
EPR71451.1
Arylsulfatase.
  
  
  0.509
EPR69338.1
Hypothetical protein.
  
     0.502
EPR69409.1
Arylsulfatase.
  
  
  0.500
EPR71285.1
Putative xylanase.
  
  
  0.455
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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